www3.rcsb.orgRCSB PDB: Homepage

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox. Contact us Toggle navigation RCSB PDB Deposit Prepare Data PDBx/mmCIF file pdb_extract SF-Tool Ligand Expo MAXIT Validate Data Validation Server Validation API Information for Journals Validation Task Forces Deposit Data wwPDB OneDep System PDB-Dev Help and Resources Deposit FAQ Validation FAQ Tutorials Annotation Policies Processing Procedures PDBx/mmCIF Dictionary Chemical Component Dictionary Biologically Interesting Molecule Reference Dictionary (BIRD) BioSync/Beamlines/Facilities Related Tools Search Advanced Search Sequence Similarity Search Structure Similarity Search Chemical Similarity Search Chemical Sketch Tool Browse by Annotations New Entries Unreleased Entries PDB Statistics Visualize Mol* (MolStar) Sequence Annotations Viewer Genome View Analyze Pairwise Structure Alignment Symmetry Resources in the PDB Structure Quality Grouping Structures PDB Citation MeSH Network Explorer PDB Statistics EPPIC Biological Assemblies External Data and Resources Integrated Resources Additional Resources Download Coordinates and Experimental Data Sequences Ligands File Download Services Web Services Learn Training Courses Guide to PDB Data Molecule of the Month Educational Resources Curricula Browse News SciArt Galleries Irving Geis David Goodsell About Contact Us About RCSB PDB Vision and Mission Citation, Usage, Privacy Policies, Logo News PDB History PDB50 User Community Publications RCSB PDB Advisory Committee Team Members Diversity, Equity, Inclusion, and Access Service Status Documentation General Help 3D Structures in the Protein Data Bank Computed Structure Models (CSM) Search and Browse Basic Search Advanced Search Browse Annotations Visualize and Analyze Sequence Viewers Pairwise Structure Alignment Exploring a 3D Structure Grouping Structures Programmatic Access Additional Resources Software Supporters Deposition Resources FAQs Glossary Careers COVID-19 219,515 Structures from the PDB 1,068,577 Computed Structure Models (CSM) Access Computed Structure Models (CSMs) of available model organisms Learn more Welcome Deposit Search Visualize Analyze Download Learn Welcome RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive Computed Structure Models (CSM) from AlphaFold DB and ModelArchive These data can be explored in context of external annotations providing a structural view of biology. May Molecule of the Month CFTR and Cystic Fibrosis Prepare Data PDBx/mmCIF file Prepare data in PDBx/mmCIF format pdb_extract Extract data from structure determination programs SF-Tool Convert structure factor files among various formats Ligand Expo Search the Chemical Component Dictionary for the IDs of released ligands MAXIT Translate data between file formats and more Validate Data Validation Server Check your X-ray, NMR, or EM structures before depositing-standalone server Validation API Validate your structures via programmatic remote access before deposition Information for Journals Instructions to journal editors Validation Task Forces Recommendations from method-specific Validation Task Forces Deposit Data wwPDB OneDep System Deposit 3D macromolecular structure data to the PDB PDB-Dev Deposit structural models obtained using integrative hybrid methods Help and Resources Deposit FAQ Validation FAQ Tutorials Annotation Policies Processing Procedures PDBx/mmCIF Dictionary Chemical Component Dictionary Biologically Interesting Molecule Reference Dictionary (BIRD) BioSync/Beamlines/Facilities Related Tools Advanced Search Complex boolean queries with values for a wide range of structure attributes Sequence Similarity Search Find similar protein and nucleic acid sequences using the mmseqs2 method Structure Similarity Search Search protein structures by global shape similarity Chemical Similarity Search Find ligands bound to macromolecules by SMILES String, InChI, or Chemical Formula Chemical Sketch Tool Draw a molecule and use the SMILES or InChI string to search for molecules in the CCD Browse by Annotations PDB entries in context of annotations by various ontologies and hierarchical classification schemes New Entries Search entries released since last Tuesday Unreleased Entries Search entries that are being processed, on hold waiting for release, or have been withdrawn PDB Statistics PDB data distribution, archive growth, and more Mol* (MolStar) 3D visualization for PDB structures and ligand binding sites. Access from each structure summary page. Sequence Annotations Viewer Graphical summaries of protein features and their relationships with UniProtKB entries. Access from each structure summary page. Genome View Graphical summaries of the correspondences between PDB entity sequences and genomes. Access from each structure summary page. Pairwise Structure Alignment Calculate pairwise structure alignments using various methods Symmetry Resources in the PDB Explore tools that display global, local, and helical symmetry among subunits Structure Quality The slider graphic compares important global quality indicators for a given structure with the PDB archive Grouping Structures Explore conservation and trends in the structure properties, features, and functions PDB Citation MeSH Network Explorer Find connections between articles describing PDB structures using MeSH terms PDB Statistics PDB data distribution, archive growth, and more EPPIC Biological Assemblies EPPIC (Evolutionary Protein-Protein Interface Classifier) finds biological interfaces from crystal contacts External Data and Resources • Integrated Resources • Additional Resources Coordinates and Experimental Data Enter PDB IDs to download multiple files in batches containing one or more file formats Sequences Enter PDB IDs to download sequences in FASTA format Ligands Enter the chemical component IDs to download SDF files with ligand coordinates File Download Services Download PDB archive or other related data files Web Services The Data API and Search API are the two main APIs that power rcsb.org Training, Outreach, and Education resources to build and support the broad PDB user community Training Courses Learn to effectively use tools for deposition, searching, analysis, and visualization of PDB data Guide to PDB Data Guided reference for exploration and interpretation of PDB entries Molecule of the Month Accounts of selected molecules from the PDB Educational Resources Resources promoting exploration in the world of proteins and nucleic acids Curricula Authentic, hands-on teaching materials, individual and group activities Browse Browse all PDB-101 resources by biological theme News Learn about educational offerings and outreach events SciArt Galleries Molecular art for downloading and printing by • Irving Geis • David Goodsell Latest Entries As of Tue May 07 2024 8QAM vaccinia virus Uracil DNA glycosidase mutant I197K-V200E-L204K 8VJN Myxococcus xanthus encapsulin cargo protein EncD in complex with flavin mononucleotide 8WO4 ZIKV rsNS1 in complex with Fab EB9 and anti-fab nanobody 8JCB Vgamma5 Vdelta1 T cell receptor complex 8T3M TRPV1 in nanodisc bound with 3 LPA molecules 8TVF Langya henipavirus fusion protein in prefusion state 9F55 UP1 in complex with Z235361315 8WIK Crystal structure of human FSP1 8JG2 Crystal structure of a biosynthetic thiolase from Megasphaera hexanoica soaked with hexanoyl-CoA 9BBM PHF filament generated from 4E-Tau(297-407) under neutral Mg2+ condition Features & Highlights Announcement: EDMAPS.rcsb.org Shutdown DSN6 formatted map files will not be offered after June 28, 2024. MTZ files available from EDMAPS.rcsb.org will be discontinued in the Fall. Join us for a Virtual Office Hour to learn more about...